Determine the number of neighbors per cell type for a cell of interest
Usage
inspect_neighbors(cell_id, nn_id_list, group_varname, df_with_labels)
Arguments
- cell_id
cell_id for which you want to assess its neighbors
- nn_id_list
output from dbscan::frNN()
- group_varname
variable containing your labels for the cell_ids, e.g. cell type
- df_with_labels
dataframe with 'cell_ids' and your 'group_varname'
Value
return dataframe with the columns: labels_of_neighbors, cell_id, n_total, and n_cells