Visualize transcripts

visualize transcripts of a gene and color by density estimates

Usage

visualize_transcripts(
  gene = NULL,
  transcripts,
  n_bins = 100,
  output_dir = ".",
  save_plot = TRUE,
  transcript_size = 0.1
)

Arguments

gene

gene name

transcripts

dataframe with the following required columns x_location, y_location and feature_name

n_bins

number of bins to use for KDE2D (default = 100)

output_dir

output directory for saving (default = ".")

save_plot

whether to save the plot (default = TRUE)

transcript_size

Size of transcript (dot) on plot (default = 0.1)