Only keep genes that are part of the interactions db, 2. Only keep cell types with at least N cells (user-defined)
Usage
filtering(seurat_obj, annot, min_cells = 5)
Arguments
- seurat_obj
Seurat object
- annot
Annotation to use for filtering
- min_cells
Minimum number of cells per annotation (default = 5)
- genes_oi
list of genes of interest from database
Value
seurat_obj Filtered seurat object