Package index
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add_proteins() - Add proteins
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aggregate_samples() - Aggregate samples w/ ranked interactions
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check_length_genesymbol() - Check genesymbol length
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combine_samples() - Combine samples
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create_db() - Create interactions databasee
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db_filtering() - Filter and clean-up database
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filter_agg_res() - Filter agg res by user constraints
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filter_by_detection_in_multi_samples() - Filter by detection in multiple samples
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filtering() - Filtering the Seurat object to reduce size of object
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format_cell2cell() - Format cell2cell CCI results
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format_cell2cell_wrapper() - Format cell2cell CCI results
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format_cellchat() - Format CellChat CCI results
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format_cpdb() - Format cpdb CCI results
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format_liana() - Format LIANA CCI results
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get_metadata() - Get metadata
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get_proteins_wrapper() - get proteins from OmniPathR based on list of genes
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hard_combine_dbs() - Hard combine databases
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is_mapped() - Check mapping
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load_cellchat_db() - Load CellChat DB
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load_cpdb_db() - Load CellPhoneDB DB
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load_liana_dbs() - Load LIANA databases
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lookup_uniprot() - Look up uniprot based on genesymbol
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make_complex() - make complex
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make_complex_wrapper() - make complex wrapper
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order_vector() - order vector
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prepare_data() - Prepare data for CCI inference
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reduce_seurat_obj() - Reduce seurat object size
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rra_interactions() - RRA interactions
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run_cellchat() - Run CellChat
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run_liana() - Run CellChat
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save_as_xlsx() - Save interactions as xlsx
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split_seurat_into_samples() - Split seurat object by variable
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take_consensus() - RRA interactions
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update_cellchat_db() - Update CellChat DB using (updated) CellPhoneDB
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update_cpdb_db() - Update CellPhoneDB