Format cpdb CCI results

Usage

format_cpdb(
  interaction_scores,
  pval,
  sign_means,
  means,
  ref_db = "data/interactions_db/ref_db.rds",
  output_dir = ".",
  sample_id = NULL
)

Arguments

interaction_scores: path to 'statistical_analysis_interaction_scores' txt file
pval: path to 'statistical_analysis_pvalues' txt file
sign_means: path to 'statistical_analysis_significant_means' txt file
means: path to 'statistical_analysis_means' txt file
ref_db: Path to interactions database (default = "data/interactions_db/ref_db.rds")
output_dir: output directory for saving output (default = '.')
sample_id: sample id to use for saving formatted CCI results (default = NULL; will determine sample id based on 'input_interactions' for this input_interactions has to be of the format 'cpdb__sample_id.csv')